PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g28870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 610aa    MW: 69613.9 Da    PI: 4.8663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g28870genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001580598220
                 EETTTTEEESSHHHHHHHH CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                 +C  Cg+ F ++ +L++H+
  CA03g28870 580 SCDTCGEEFDSRNQLHKHL 598
                 6*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.74E-13299345No hitNo description
SMARTSM004513.3E-6300334IPR003604Zinc finger, U1-type
SMARTSM003551.7303327IPR015880Zinc finger, C2H2-like
PfamPF121713.9E-10303328IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280305327IPR007087Zinc finger, C2H2
SMARTSM003555579603IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.536579608IPR007087Zinc finger, C2H2
PROSITE patternPS000280581603IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAAEAAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXSD ARERAWYDSH RSQILFSNSG PSSSGNSGSV PNLFSFFSNS VYSGYSDKGK  120
GFYKVYGDLF EKIYQNELNF ARKLGTEFPK EAPLMGNLES PYAQVTAFYS YWFGFVTVMD  180
FCWVDQYDVM AGPNRKSRRV MEDENKKLRK KARREYNETV RGLAEFVKKR DKRVIDMQMK  240
RNEEMEKKKE EERKRKKELE REKAERAKKY VEPEWSKAEE LEDDGIEEES DEDEKKKVDG  300
KELYCVVCSK KFKSEKQWKN HEQSKKHKEK VAALREAFDD EDDEYAELAE LVEDGASEDI  360
DDGVDELAER LESSTLIQED EREDDEVQSS EEDETTNYQS GSNLKRAVDE LGLDDDDEAS  420
VLEAMISGRK SRKNAGSGGS RQTPTKNVQG ESGNDEMDFM EYNNLRSTRR NKGGRKQRNR  480
RPQEEEEEAG GGGNSEQVQL DTEVDDNAYN DSSACQGLSS QTSAERANDH EGDDVSGDGE  540
KVTSKGTEKK TTVKKDKVNK SKDTTKGRKQ KAKSKSCSNS CDTCGEEFDS RNQLHKHLGS  600
TGHAKLKSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205213KKLRKKARR
2252256RKRKK
3252257RKRKKE
4468481RRNKGGRKQRNRRP
5469480RNKGGRKQRNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563340.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-146JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLK4BL160.0K4BL16_SOLLC; Uncharacterized protein
STRINGSolyc03g115140.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61101516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-100DNAJ heat shock N-terminal domain-containing protein